run_metadata: 32929
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32929 | SRR29498573 | SRX25008879 | SRS21709098 | SRP515416 | PRJNA1127032 | Zebrafish Tissue Mid Range RNA Sequencing | PRJNA1127032 | Other | This project sequenced mid size ranged RNA from zebrafish liver brain and gut tissues using male and female parallel samples. | F2l | strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:liver|identifier:F2l|BioSampleModel:Model organism or animal | midRNA seq Danio rerio | 04 | 04 | Total RNA was extracted from different zebrafish tissues using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology. | RNA-Seq | TRANSCRIPTOMIC | size fractionation | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP515416 | F2l_R1.fq.gz F2l_R2.fq.gz | fastq fastq | 8701893900.0 | 29006313.0 | F2l R1.fq.gz | 0:150 1:150 | A:1977580339;C:2299061131;G:2585058451;T:1840095650;N:98329 | 150 | 150 | 1977580339 | 2299061131 | 2585058451 | 1840095650 | 98329 | SRX25008879 | SRS21709098 | SRA1905460 | Eotvos Lorand University|Genetics | Eotvos Lorand University | 2 | 0.72425 | 0.57704 | 0.15111 | 0.37121 | 0.99744 | 0.99762 | 0.61161 | 0.55762 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | size_fractionation | unknown | bulk | unknown | unknown | Hungary | 2024-06-22 | Adult | Adult | Liver | Liver and Biliary System |