run_metadata: 32923
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32923 | SRR29498567 | SRX25008885 | SRS21709104 | SRP515416 | PRJNA1127032 | Zebrafish Tissue Mid Range RNA Sequencing | PRJNA1127032 | Other | This project sequenced mid size ranged RNA from zebrafish liver brain and gut tissues using male and female parallel samples. | F2g | strain:AB|age:adult|dev stage:adult|collection date:2020|geo loc name:Hungary|sex:female|tissue:gut|identifier:F2g|BioSampleModel:Model organism or animal | midRNA seq Danio rerio | 10 | 10 | Total RNA was extracted from different zebrafish tissues using TRIzol reagent. RNA purity can be assesed by genomic DNA contamination minimized using DNase I and RNA Clean Up kit. post size selection our samples were sequenced with Illumina technology. | RNA-Seq | TRANSCRIPTOMIC | size fractionation | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP515416 | F2g_R2.fq.gz F2g_R1.fq.gz | fastq fastq | 9101949000.0 | 30339830.0 | F2g R1.fq.gz | 0:150 1:150 | A:2052853923;C:2394247721;G:2773304460;T:1881440199;N:102697 | 150 | 150 | 2052853923 | 2394247721 | 2773304460 | 1881440199 | 102697 | SRX25008885 | SRS21709104 | SRA1905460 | Eotvos Lorand University|Genetics | Eotvos Lorand University | 2 | 0.65449 | 0.37434 | 0.04313 | 0.12258 | 0.99519 | 0.99527 | 0.61425 | 0.56139 | 150 | 150 | B | B | mate2-mate1 similar by mapping diff | illumina | novaseq_era | unknown | size_fractionation | unknown | bulk | unknown | unknown | Hungary | 2024-06-22 | Adult | Adult | Gut | Digestive System |