run_metadata: 32719
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32719 | SRR29406603 | SRX24920052 | SRS21625714 | SRP513845 | PRJNA1123436 | Transcriptome analysis of liver tissue of zebrafish | PRJNA1123436 | Other | We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles. | Small particle size was purified for 15 days in the second parallel group | 5 3L | STSB 3L | isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 11|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal | RNA Seq in Danio rerio: adult liver | STSB 3L | STSB 3L | normal RNA Seq nodules | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP513845 | STSB-3L.R1.fq.gz STSB-3L.R2.fq.gz | fastq fastq | 6317501400.0 | 21058338.0 | STSB 3L.R1.fq.gz | 0:150 1:150 | A:1595686097;C:1528031899;G:1568306906;T:1625221652;N:254846 | 150 | 150 | 1595686097 | 1528031899 | 1568306906 | 1625221652 | 254846 | SRX24920052 | SRS21625714 | SRA1897556 | Qingdao University of Science and technology|College of marine science and biological engineeri | Qingdao University of Science and technology | 2 | 0.92956 | 0.93181 | 0.03485 | 0.03514 | 0.79338 | 0.79316 | 0.48308 | 0.48569 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-06-13 | Adult | Adult | Liver | Liver and Biliary System |