run_metadata: 32718
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32718 | SRR29406602 | SRX24920053 | SRS21625715 | SRP513845 | PRJNA1123436 | Transcriptome analysis of liver tissue of zebrafish | PRJNA1123436 | Other | We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles. | Small particle size was purified for 15 days in a third parallel group | 5 5L | STSC 5L | isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 11|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal | RNA Seq in Danio rerio: adult liver | STSC 5L | STSC 5L | normal RNA Seq nodules | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP513845 | STSC-5L.R1.fq.gz STSC-5L.R2.fq.gz | fastq fastq | 7062074100.0 | 23540247.0 | STSC 5L.R1.fq.gz | 0:150 1:150 | A:1830474945;C:1684428035;G:1721961922;T:1824937880;N:271318 | 150 | 150 | 1830474945 | 1684428035 | 1721961922 | 1824937880 | 271318 | SRX24920053 | SRS21625715 | SRA1897556 | Qingdao University of Science and technology|College of marine science and biological engineeri | Qingdao University of Science and technology | 2 | 0.94308 | 0.94287 | 0.01164 | 0.0115 | 0.87578 | 0.87649 | 0.16764 | 0.16771 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-06-13 | Adult | Adult | Liver | Liver and Biliary System |