run_metadata: 32717
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32717 | SRR29406601 | SRX24920054 | SRS21625716 | SRP513845 | PRJNA1123436 | Transcriptome analysis of liver tissue of zebrafish | PRJNA1123436 | Other | We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles. | Medium particle size was purified for 15 days by the first parallel group | 6 1L | MTSA 1L | isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 10|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal | RNA Seq in Danio rerio: adult liver | MTSA 1L | MTSA 1L | normal RNA Seq nodules | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP513845 | MTSA-1L.R1.fq.gz MTSA-1L.R2.fq.gz | fastq fastq | 6480265500.0 | 21600885.0 | MTSA 1L.R1.fq.gz | 0:150 1:150 | A:1663931994;C:1545977339;G:1596507131;T:1673597479;N:251557 | 150 | 150 | 1663931994 | 1545977339 | 1596507131 | 1673597479 | 251557 | SRX24920054 | SRS21625716 | SRA1897556 | Qingdao University of Science and technology|College of marine science and biological engineeri | Qingdao University of Science and technology | 2 | 0.94301 | 0.9442 | 0.01839 | 0.01805 | 0.83782 | 0.83816 | 0.24052 | 0.24897 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-06-13 | Adult | Adult | Liver | Liver and Biliary System |