run_metadata: 32715
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32715 | SRR29406599 | SRX24920056 | SRS21625718 | SRP513845 | PRJNA1123436 | Transcriptome analysis of liver tissue of zebrafish | PRJNA1123436 | Other | We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles. | Medium particle size was purified for 15 days in a third parallel group | 6 5L | MTSC 5L | isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 10|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal | RNA Seq in Danio rerio: adult liver | MTSC 5L | MTSC 5L | normal RNA Seq nodules | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP513845 | MTSC-5L.R1.fq.gz MTSC-5L.R2.fq.gz | fastq fastq | 6320748000.0 | 21069160.0 | MTSC 5L.R1.fq.gz | 0:150 1:150 | A:1636210855;C:1500079346;G:1543130919;T:1641070669;N:256211 | 150 | 150 | 1636210855 | 1500079346 | 1543130919 | 1641070669 | 256211 | SRX24920056 | SRS21625718 | SRA1897556 | Qingdao University of Science and technology|College of marine science and biological engineeri | Qingdao University of Science and technology | 2 | 0.94545 | 0.9478 | 0.01549 | 0.01493 | 0.86162 | 0.86202 | 0.20246 | 0.21933 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-06-13 | Adult | Adult | Liver | Liver and Biliary System |