run_metadata: 32707
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32707 | SRR29406591 | SRX24920064 | SRS21625725 | SRP513845 | PRJNA1123436 | Transcriptome analysis of liver tissue of zebrafish | PRJNA1123436 | Other | We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles. | Medium particle size exposure for 90 days in the first parallel group | 9 1L | MTTA 1L | isolate:zebrafish|breed:Wild type|age:3 months|collection date:2024 01 09|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal | RNA Seq in Danio rerio: adult liver | MTTA 1L | MTTA 1L | normal RNA Seq nodules | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP513845 | MTTA-1L.R1.fq.gz MTTA-1L.R2.fq.gz | fastq fastq | 7031049900.0 | 23436833.0 | MTTA 1L.R1.fq.gz | 0:150 1:150 | A:1828835490;C:1620351293;G:1749887912;T:1831690634;N:284571 | 150 | 150 | 1828835490 | 1620351293 | 1749887912 | 1831690634 | 284571 | SRX24920064 | SRS21625725 | SRA1897556 | Qingdao University of Science and technology|College of marine science and biological engineeri | Qingdao University of Science and technology | 2 | 0.93411 | 0.93657 | 0.00573 | 0.00591 | 0.91849 | 0.91894 | 0.10237 | 0.103 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-06-13 | Adult | Adult | Liver | Liver and Biliary System |