run_metadata: 32696
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32696 | SRR29406580 | SRX24920075 | SRS21625738 | SRP513845 | PRJNA1123436 | Transcriptome analysis of liver tissue of zebrafish | PRJNA1123436 | Other | We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles. | A third parallel group with medium particle size was exposed for 15 days | 3 5L | MTFC 5L | isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 26|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal | RNA Seq in Danio rerio: adult liver | MTFC 5L | MTFC 5L | normal RNA Seq nodules | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP513845 | MTFC-5L.R1.fq.gz MTFC-5L.R2.fq.gz | fastq fastq | 5884371600.0 | 19614572.0 | MTFC 5L.R1.fq.gz | 0:150 1:150 | A:1511226389;C:1383833941;G:1480444885;T:1508613837;N:252548 | 150 | 150 | 1511226389 | 1383833941 | 1480444885 | 1508613837 | 252548 | SRX24920075 | SRS21625738 | SRA1897556 | Qingdao University of Science and technology|College of marine science and biological engineeri | Qingdao University of Science and technology | 2 | 0.87714 | 0.87949 | 0.01411 | 0.0137 | 0.86198 | 0.86285 | 0.19648 | 0.19651 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-06-13 | Adult | Adult | Liver | Liver and Biliary System |