run_metadata: 32695
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32695 | SRR29406579 | SRX24920076 | SRS21625737 | SRP513845 | PRJNA1123436 | Transcriptome analysis of liver tissue of zebrafish | PRJNA1123436 | Other | We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles. | Large particle sizes were exposed to the first parallel group for xxx days | 4 1L | LTFA 1L | isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 28|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal | RNA Seq in Danio rerio: adult liver | LTFA 1L | LTFA 1L | normal RNA Seq nodules | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP513845 | LTFA-1L.R1.fq.gz LTFA-1L.R2.fq.gz | fastq fastq | 7055070900.0 | 23516903.0 | LTFA 1L.R1.fq.gz | 0:150 1:150 | A:1807337916;C:1674299371;G:1741443458;T:1831719305;N:270850 | 150 | 150 | 1807337916 | 1674299371 | 1741443458 | 1831719305 | 270850 | SRX24920076 | SRS21625737 | SRA1897556 | Qingdao University of Science and technology|College of marine science and biological engineeri | Qingdao University of Science and technology | 2 | 0.91757 | 0.91901 | 0.05066 | 0.05102 | 0.77171 | 0.77374 | 0.48939 | 0.495 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-06-13 | Adult | Adult | Liver | Liver and Biliary System |