run_metadata: 32668
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32668 | SRR31857869 | SRX27217635 | SRS23666641 | SRP513561 | PRJNA1123309 | Interrogating Disease Gene Function | PRJNA1123309 | Other | Genes and genetic variants associated with human disease are continually being discovered but validating their causative roles and mechanisms remains a significant challenge. CRISPR/Cas9 genome editing in model organisms like zebrafish can enable phenotypic characterization of founder generation F0 knockouts but these approaches are not amenable to high throughput genetic screening due to high variability cost and low phenotype penetrance. | WT | strain:TAB 5|isolate:WT|age:3dpf|collection date:2020 11 10|geo loc name:USA: Oklahoma City|sex:unknown|tissue:Whole fish|BioSampleModel:Model organism or animal | TAB5 3dpf | H4 | H4 | adapter | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq X Plus | SRP513561 | H4_S6_R1_001.fastq.gz H4_S6_R2_001.fastq.gz | fastq fastq | 12571004586.0 | 41625843.0 | H4 S6 R1 001.fastq.gz | 0:151 1:151 | A:3381341743;C:2824189848;G:3028332660;T:3337047324;N:93011 | 151 | 151 | 3381341743 | 2824189848 | 3028332660 | 3337047324 | 93011 | SRX27217635 | SRS23666641 | SRA2042839 | Oklahoma Medical Research Foundation|Genes & Human Disease Research Program | Oklahoma Medical Research Foundation | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | United States | 2024-12-30 | Larval | Larval | Whole Organism | All anatomical structures |