run_metadata: 32527
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32527 | SRR29290267 | SRX24807372 | SRS21522244 | SRP511901 | PRJNA1120203 | Study of liver transcriptome in zebrafish May 29 '24 | PRJNA1120203 | Other | Liver of the transcriptome data from zebrafish exposed to small car tire wear particles | Control parallel 2 | liver transcriptome | L1 2 | strain:not applicable|isolate:not applicable|breed:zebrafish|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:3 month|collection date:2023 08 11|geo loc name:China|sex:not collected|tissue:liver|birth date:2023 05 12|experiment description:Sample from control group|BioSampleModel:Model organism or animal | Zebrafish liver | L1 2 | L1 2 | Total RNA was extracted from the zebrafish liver tissue using a commercial RNA extraction kit following the manufacturer's instructions.The prepared library was sequenced on an Illumina HiSeq platform generating paired end reads. | OTHER | METATRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP511901 | FCFB1-3L.R1.fq.gz FCFB1-3L.R2.fq.gz | fastq fastq | 6637856700.0 | 22126189.0 | FCFB1 3L.R1.fq.gz | 0:150 1:150 | A:1714779556;C:1575842801;G:1628771136;T:1718209685;N:253522 | 150 | 150 | 1714779556 | 1575842801 | 1628771136 | 1718209685 | 253522 | SRX24807372 | SRS21522244 | SRA1889615 | Qingdao University of Science and technology|College of marine science and biological engineeri | Qingdao University of Science and technology | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2024-06-05 | Adult | Adult | Liver | Liver and Biliary System |