run_metadata: 32519
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32519 | SRR29290259 | SRX24807380 | SRS21522252 | SRP511901 | PRJNA1120203 | Study of liver transcriptome in zebrafish May 29 '24 | PRJNA1120203 | Other | Liver of the transcriptome data from zebrafish exposed to small car tire wear particles | 15 days experimental group parallel 3 | liver transcriptome | L6 3 | strain:not applicable|isolate:not applicable|breed:zebrafish|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:3 month|collection date:2023 08 10|geo loc name:China|sex:not collected|tissue:liver|birth date:2023 05 16|experiment description:Exposure to 40 60 mesh tire wear particles for 15 days|BioSampleModel:Model organism or animal | Zebrafish liver | L6 3 | L6 3 | Total RNA was extracted from the zebrafish liver tissue using a commercial RNA extraction kit following the manufacturer's instructions.The prepared library was sequenced on an Illumina HiSeq platform generating paired end reads. | OTHER | METATRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP511901 | TSFC1-3L.R1.fq.gz TSFC1-3L.R2.fq.gz | fastq fastq | 6857466600.0 | 22858222.0 | TSFC1 3L.R1.fq.gz | 0:150 1:150 | A:1755136176;C:1642995302;G:1688825155;T:1770233592;N:276375 | 150 | 150 | 1755136176 | 1642995302 | 1688825155 | 1770233592 | 276375 | SRX24807380 | SRS21522252 | SRA1889615 | Qingdao University of Science and technology|College of marine science and biological engineeri | Qingdao University of Science and technology | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2024-06-05 | Adult | Adult | Liver | Liver and Biliary System |