run_metadata: 32511
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32511 | SRR29290251 | SRX24807388 | SRS21522260 | SRP511901 | PRJNA1120203 | Study of liver transcriptome in zebrafish May 29 '24 | PRJNA1120203 | Other | Liver of the transcriptome data from zebrafish exposed to small car tire wear particles | 30 days experimental group parallel 1 | liver transcriptome | L3 1 | strain:not applicable|isolate:not applicable|breed:zebrafish|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:3 month|collection date:2023 08 23|geo loc name:China|sex:not collected|tissue:liver|birth date:2023 05 11|experiment description:Exposed to tire wear particles above 120 mesh excretion for 15 days|BioSampleModel:Model organism or animal | Zebrafish liver | L3 1 | L3 1 | Total RNA was extracted from the zebrafish liver tissue using a commercial RNA extraction kit following the manufacturer's instructions.The prepared library was sequenced on an Illumina HiSeq platform generating paired end reads. | OTHER | METATRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP511901 | TLSA-1L.R1.fq.gz TLSA-1L.R2.fq.gz | fastq fastq | 6188928300.0 | 20629761.0 | TLSA 1L.R1.fq.gz | 0:150 1:150 | A:1584479312;C:1464260894;G:1549296685;T:1590644766;N:246643 | 150 | 150 | 1584479312 | 1464260894 | 1549296685 | 1590644766 | 246643 | SRX24807388 | SRS21522260 | SRA1889615 | Qingdao University of Science and technology|College of marine science and biological engineeri | Qingdao University of Science and technology | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2024-06-05 | Adult | Adult | Liver | Liver and Biliary System |