run_metadata: 32372
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32372 | SRR29180532 | SRX24700712 | SRS21428244 | SRP509851 | PRJNA1116337 | Ioxynil and diethylstilbestrol disrupt vascular and heart development in zebrafish | PRJNA1116337 | Other | Endocrine disruption is one of the consequences of industrialization and chemicals released into theenvironment have a profound impact on organisms. Waterborne micromolar concentrations of ioxynil IOX and diethylstilbestrol DES in fish affect the development of the heart vasculature and thyroid gland. | CTR | isolate:control|age:48 hpf|dev stage:embryos|collection date:2018 06|geo loc name:Portugal|sex:pooled male and female|tissue:embryos|treatment:control|BioSampleModel:Model organism or animal | RNA seq of CTR treated | CTR | CTR | Sequencing the transcriptomes of zebrafish embryos of control | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP509851 | CTR_AGGCAG_L001_R1_001.fastq.gz CTR_AGGCAG_L001_R2_001.fastq.gz | fastq fastq | 9602954100.0 | 32009847.0 | CTR AGGCAG L001 R1 001.fastq.gz | 0:150 1:150 | A:2637866848;C:2169057233;G:2152906664;T:2642882530;N:240825 | 150 | 150 | 2637866848 | 2169057233 | 2152906664 | 2642882530 | 240825 | SRX24700712 | SRS21428244 | SRA1878028 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-05-25 | Hatching | Embryo | Embryo Imprecise | All anatomical structures |