run_metadata: 32365
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32365 | SRR29157961 | SRX24679079 | SRS21413710 | SRP509709 | PRJNA1115529 | Danio rerio Raw sequence reads of gonadal tissue | PRJNA1115529 | Whole Genome Sequencing | Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected | The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis | Model organism or animal sample from Danio rerio | Testis CTRL | strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal | zebrafish testis RNA seq from Control | Testis CTRL | Testis CTRL | The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP509709 | C4_2.fq.gz C4_1.fq.gz C3_2.fq.gz C3_1.fq.gz C2_2.fq.gz C2_1.fq.gz C1_2.fq.gz C1_1.fq.gz | fastq fastq fastq fastq fastq fastq fastq fastq | 47457731100.0 | 158192437.0 | C1 1.fq.gz | 0:150 1:150 | A:12817545225;C:10993554835;G:10941137146;T:12704995076;N:498818 | 150 | 150 | 12817545225 | 10993554835 | 10941137146 | 12704995076 | 498818 | SRX24679079 | SRS21413710 | SRA1876810 | CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina | CIIMAR - Interdisciplinary Centre of Marine and Environmental Research | 2 | 0.93023 | 0.9282 | 0.0889 | 0.08851 | 0.63106 | 0.63098 | 0.4869 | 0.48618 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Portugal | 2024-05-24 | Adult | Adult | Gonad | Reproductive System |