run_metadata: 32364
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32364 | SRR29157960 | SRX24679080 | SRS21413711 | SRP509709 | PRJNA1115529 | Danio rerio Raw sequence reads of gonadal tissue | PRJNA1115529 | Whole Genome Sequencing | Evaluation of gene expression changes in zebrafish gonads following a full life cycle exposure to the non steroidal anti inflammatory drug naproxen NPX in order to evaluate the main pathways affected | The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on zebrafish testis | Model organism or animal sample from Danio rerio | Testis NPX | strain:AB|age:4 month|dev stage:Adult|collection date:2021 03|geo loc name:Portugal: Matosinhos|sex:male|tissue:Testis|BioSampleModel:Model organism or animal | zebrafish testis RNA seq from NPX | Testis NPX | Testis NPX | The current study assessed the long term effects of environmentally relevant concentrations of NPX ng/L to low g/L on parental zebrafish testis | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP509709 | G4_2.fq.gz G4_1.fq.gz G3_2.fq.gz G3_1.fq.gz G2_2.fq.gz G2_1.fq.gz G1_2.fq.gz G1_1.fq.gz | fastq fastq fastq fastq fastq fastq fastq fastq | 48293186700.0 | 160977289.0 | G1 1.fq.gz | 0:150 1:150 | A:12737664564;C:11515099418;G:11506913376;T:12532403181;N:1106161 | 150 | 150 | 12737664564 | 11515099418 | 11506913376 | 12532403181 | 1106161 | SRX24679080 | SRS21413711 | SRA1876810 | CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina | CIIMAR - Interdisciplinary Centre of Marine and Environmental Research | 2 | 0.93531 | 0.93628 | 0.04883 | 0.04847 | 0.66707 | 0.66728 | 0.47213 | 0.47226 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Portugal | 2024-05-24 | Adult | Adult | Gonad | Reproductive System |