run_metadata: 32015
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32015 | SRR28906421 | SRX24462836 | SRS21215783 | SRP505889 | PRJNA1108009 | Danio rerio Raw sequence reads | PRJNA1108009 | Whole Genome Sequencing | cpt1b gene knockout KO and wild type WT zebrafish Danio Rerio cardiac transcriptome | H KO 1dpt 2 | strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:3mpf|dev stage:Adult|collection date:2023 08|geo loc name:China:wuhan|sex:male|tissue:heart|lat lon:30.56 N 114.46 E|BioSampleModel:Model organism or animal | RNA seq of danio rario:adult male heart | H KO 1dpt 2 | H KO 1dpt 2 | normal RNA seq of Danio rerio | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP505889 | H-KO-1dpt-2_1.fq.gz H-KO-1dpt-2_2.fq.gz | fastq fastq | 8198157000.0 | 27327190.0 | H KO 1dpt 2 1.fq.gz | 0:150 1:150 | A:2235208758;C:1865834372;G:1891495548;T:2203633727;N:1984595 | 150 | 150 | 2235208758 | 1865834372 | 1891495548 | 2203633727 | 1984595 | SRX24462836 | SRS21215783 | SRA1859838 | Wuhan University|Taikang Medical School (School of Basic Medical Sc | Wuhan University | 2 | 0.9434 | 0.94233 | 0.10137 | 0.10074 | 0.71516 | 0.71553 | 0.48646 | 0.50212 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-05-06 | Adult | Adult | Heart | Cardiovascular System |