run_metadata: 31893
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31893 | SRR28743288 | SRX24309167 | SRS21071677 | SRP502786 | PRJNA1102287 | Zebrafish inppl1a stl445 mutant RNAseq | PRJNA1102287 | Other | These are RNAseq data from pooled wild type and inppl1a stl445 Danio rerio mutant whole embryos at 3 dpf | AB d3 sample 3 | AB d3 sample 3 | strain:AB wild type 3|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 dpf|dev stage:3 dpf|collection date:not applicable|geo loc name:not applicable|sex:not applicable|tissue:whole embryo 3|biomaterial provider:GRAY LAB|genotype:AB wild type 3|BioSampleModel:Model organism or animal | RNA Seq of AB wild type 3 | AB3 | AB3 | Novagene | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP502786 | AB3_1.fq.gz AB3_2.fq.gz | fastq fastq | 6003236700.0 | 20010789.0 | AB3 1.fq.gz | 0:150 1:150 | A:1587549671;C:1423913333;G:1427635736;T:1563843191;N:294769 | 150 | 150 | 1587549671 | 1423913333 | 1427635736 | 1563843191 | 294769 | SRX24309167 | SRS21071677 | SRA1848931 | Univeristy of Texas - Dell Pediatrics Reseach Institute|Nutritional Sciences | Univeristy of Texas - Dell Pediatrics Reseach Institute | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | United States | 2024-04-19 | Larval | Larval | Whole Organism | All anatomical structures |