run_metadata: 31888
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31888 | SRR28747855 | SRX24313479 | SRS21075230 | SRP502930 | PRJNA1102048 | Danio rerio Raw sequence reads | PRJNA1102048 | Whole Genome Sequencing | This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis. | Model organism or animal sample from Danio rerio | Zebrafish 4 octyl itaconate sample2 | strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal | Zebrafish 4 octyl itaconate 2 | 4OI 2 | 4OI 2 | DNA barcode | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP502930 | 4OI-2_S28_L003_R1_001.fastq.gz 4OI-2_S28_L003_R2_001.fastq.gz | fastq fastq | 6579714300.0 | 21932381.0 | 4OI 2 S28 L003 R1 001.fastq.gz | 0:150 1:150 | A:1710345718;C:1580260893;G:1608081826;T:1680921918;N:103945 | 150 | 150 | 1710345718 | 1580260893 | 1608081826 | 1680921918 | 103945 | SRX24313479 | SRS21075230 | SRA1849567 | Nantong University|Institute of Special Environmental Medicine | Nantong University | 2 | 0.96511 | 0.96418 | 0.03843 | 0.0384 | 0.70179 | 0.7027 | 0.49174 | 0.5066 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2024-04-19 | Larval | Larval | Whole Organism | All anatomical structures |