run_metadata: 31887
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31887 | SRR28747854 | SRX24313480 | SRS21075232 | SRP502930 | PRJNA1102048 | Danio rerio Raw sequence reads | PRJNA1102048 | Whole Genome Sequencing | This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis. | Model organism or animal sample from Danio rerio | Zebrafish 4 octyl itaconate sample3 | strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal | Zebrafish 4 octyl itaconate 3 | 4OI 3 | 4OI 3 | DNA barcode | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP502930 | 4OI-3_S23_L004_R1_001.fastq.gz 4OI-3_S23_L004_R2_001.fastq.gz | fastq fastq | 8273990400.0 | 27579968.0 | 4OI 3 S23 L004 R1 001.fastq.gz | 0:150 1:150 | A:2162937415;C:1975194532;G:2012089890;T:2123723196;N:45367 | 150 | 150 | 2162937415 | 1975194532 | 2012089890 | 2123723196 | 45367 | SRX24313480 | SRS21075232 | SRA1849567 | Nantong University|Institute of Special Environmental Medicine | Nantong University | 2 | 0.96535 | 0.96542 | 0.03083 | 0.03097 | 0.71279 | 0.71295 | 0.48276 | 0.47927 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2024-04-19 | Larval | Larval | Whole Organism | All anatomical structures |