run_metadata: 31886
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31886 | SRR28747853 | SRX24313481 | SRS21075234 | SRP502930 | PRJNA1102048 | Danio rerio Raw sequence reads | PRJNA1102048 | Whole Genome Sequencing | This experimental study aimed to investigate a role of Irg1l/itaconate axis in zebrafish neuromast development using RNA seq analysis. At 5dpf Larvae treated with 4 octyl itaconate was preformed to subsequent transcriptomic analysis. | Model organism or animal sample from Danio rerio | Zebrafish control sample1 | strain:TgBrn3C:mGFP|age:5dpf|collection date:2022 09 25|geo loc name:China|sex:pooled male and female|tissue:larvae|BioSampleModel:Model organism or animal | Zebrafish control 1 | Ctrl 1 | Ctrl 1 | DNA barcode | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP502930 | Ctrl-1_S24_L004_R1_001.fastq.gz Ctrl-1_S24_L004_R2_001.fastq.gz | fastq fastq | 9747041100.0 | 32490137.0 | Ctrl 1 S24 L004 R1 001.fastq.gz | 0:150 1:150 | A:2863031605;C:2014131410;G:2067943208;T:2801881561;N:53316 | 150 | 150 | 2863031605 | 2014131410 | 2067943208 | 2801881561 | 53316 | SRX24313481 | SRS21075234 | SRA1849567 | Nantong University|Institute of Special Environmental Medicine | Nantong University | 2 | 0.94378 | 0.94419 | 0.14935 | 0.14934 | 0.70749 | 0.7069 | 0.60161 | 0.59912 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2024-04-19 | Larval | Larval | Whole Organism | All anatomical structures |