run_metadata: 31656
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31656 | SRR28480708 | SRX24083180 | SRS20872834 | SRP498323 | PRJNA1092793 | Transcriptome in zebrafish embryos by SCCPs | PRJNA1092793 | Other | To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach. | C10 13 51.5% Cl 100bp | zebrafish C10 13 51.5% Cl 100bp | strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 100bp|BioSampleModel:Model organism or animal | RNA seq of zebrafish C10 13 51.5% Cl 100bp | sccp41 | sccp41 | RNA was extracted from zebrafish embryos post SCCPs exposure | RNA-Seq | TRANSCRIPTOMIC | Reduced Representation | PAIRED | ION_TORRENT | Ion Torrent Proton | SRP498323 | IonXpress_025.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq | fastq | 107004692.0 | 958688.0 | IonXpress 025.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq | 0:111.62 | A:25315357;C:28424669;G:27858900;T:25405766;N:0 | 111 | 25315357 | 28424669 | 27858900 | 25405766 | 0 | SRX24083180 | SRS20872834 | SRA1834887 | Nanjing University,|School of the Environment | Nanjing University, | B | usable mapping rate | ion_torrent | ion_torrent | unknown | other | unknown | bulk | unknown | unknown | China | 2024-03-28 | Pharyngula | Embryo | Embryo Imprecise | All anatomical structures |