run_metadata: 31515
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31515 | SRR28435338 | SRX24039256 | SRS20832030 | SRP497569 | PRJNA1090643 | Danio rerio Raw sequence reads | PRJNA1090643 | Other | The transcriptome of WT and cry dash / mutant are tested at CT 4 and CT 16. | cry dash / group 1 at CT 16 | Cryd CT16G1 | Unknown BA023 04T0007.fq.gz | isolate:The first group of cry dash / fish collected at CT 16.|age:120 hpf|collection date:2023 06 10|geo loc name:China:Suzhou|sex:not determined|tissue:larvae|biomaterial provider:Han Wang|birth date:2023 06 05|genotype:cry dash / |health state:Health|BioSampleModel:Model organism or animal | RNA seq of Danio rerio: larvae | Unknown BA023 04T0007.fq.gz | Unknown BA023 04T0007.fq.gz | CT16 cry dash group1 | RNA-Seq | TRANSCRIPTOMIC | size fractionation | PAIRED | ILLUMINA | HiSeq X Five | SRP497569 | Unknown_BA023-04T0007_good_2.fq.gz Unknown_BA023-04T0007_good_1.fq.gz | fastq fastq | 7247045982.0 | 24239568.0 | Unknown BA023 04T0007 good 1.fq.gz | 0:149.49 1:149.49 | A:1868252704;C:1747715656;G:1761213537;T:1869681292;N:182793 | 149 | 149 | 1868252704 | 1747715656 | 1761213537 | 1869681292 | 182793 | SRX24039256 | SRS20832030 | SRA1832685 | Soochow University|School of Biology & Basic Medical Sciences | Soochow University | 2 | 0.95954 | 0.95937 | 0.0624 | 0.06218 | 0.68809 | 0.68765 | 0.47347 | 0.47429 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | size_fractionation | unknown | bulk | unknown | unknown | Unknown | 2024-03-25 | Larval | Larval | Undetermined | Undetermined |