run_metadata: 30682
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30682 | SRR28233248 | SRX23844444 | SRS20664870 | SRP493528 | PRJNA1084193 | Knockout transcriptome sequencing of TRPA1b gene in zebrafish | PRJNA1084193 | Other | WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment respectively. | A1b22 | strain:TRPA1b KO8|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal | A1b22 | A1b22 | A1b22 | ribonucleic acid | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq X Plus | SRP493528 | A1-2-2_R1.fq.gz A1-2-2_R2.fq.gz | fastq fastq | 6529918800.0 | 21766396.0 | A1 2 2 R1.fq.gz | 0:150 1:150 | A:1681524014;C:1580514490;G:1605344761;T:1662085103;N:450432 | 150 | 150 | 1681524014 | 1580514490 | 1605344761 | 1662085103 | 450432 | SRX23844444 | SRS20664870 | SRA1818205 | Shanghai Ocean University|College of Aquaculture and Life Sciences | Shanghai Ocean University | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-03-06 | Adult | Adult | Gill | Respiratory System |