run_metadata: 30676
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30676 | SRR28233242 | SRX23844450 | SRS20664876 | SRP493528 | PRJNA1084193 | Knockout transcriptome sequencing of TRPA1b gene in zebrafish | PRJNA1084193 | Other | WT and KO were sampled at the critical and half death time of room temperature and high temperature treatment respectively. | WT21 | strain:WT7|age:4mpf|dev stage:adult|collection date:2024 01 20|geo loc name:China|sex:male|tissue:gill|BioSampleModel:Model organism or animal | WT21 | WT21 | WT21 | ribonucleic acid | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq X Plus | SRP493528 | WT-2-1_R1.fq.gz WT-2-1_R2.fq.gz | fastq fastq | 6617487600.0 | 22058292.0 | WT 2 1 R1.fq.gz | 0:150 1:150 | A:1701231328;C:1606849699;G:1625342674;T:1683607145;N:456754 | 150 | 150 | 1701231328 | 1606849699 | 1625342674 | 1683607145 | 456754 | SRX23844450 | SRS20664876 | SRA1818205 | Shanghai Ocean University|College of Aquaculture and Life Sciences | Shanghai Ocean University | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-03-06 | Adult | Adult | Gill | Respiratory System |