run_metadata: 30614
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30614 | SRR27899044 | SRX23559290 | SRS20405500 | SRP488601 | PRJNA1073976 | Transcriptome sequencing of zebrafish | PRJNA1073976 | Other | This study utilized transcriptome sequencing technology to investigate the immunomodulatory effect of Lactobacillus gasseri LGV03 on zebrafish. | Zebrafish | Zebrafish | strain:AB|isolate:Zebrafish|breed:animals|cultivar:not applicable|ecotype:not applicable|age:7 day|dev stage:7 day|collection date:2023 08 21|geo loc name:China: Guangzhou|sex:not applicable|tissue:whole zebrafish|BioSampleModel:Model organism or animal | RNA Seq of 7 dpf zebrafish | B3 | B3 | ployA enrichment mRNA fragmentation First strand cDNA synthesis magnetic bead purification of one strand second strand cDNA synthesis strand end repair addition of A at the 3 'end addition of splice Purification and library amplification Sequencing sample library construction completed | RNA-Seq | TRANSCRIPTOMIC | cDNA_randomPriming | PAIRED | VELA_DIAGNOSTICS | Sentosa SQ301 | SRP488601 | B3_QN202308290926_S30_L006_R1_001.fastq.gz B3_QN202308290926_S30_L006_R2_001.fastq.gz | fastq fastq | 5798168100.0 | 19327227.0 | B3 QN202308290926 S30 L006 R1 001.fastq.gz | 0:150 1:150 | A:1523711096;C:1370345137;G:1386721981;T:1517002959;N:386927 | 150 | 150 | 1523711096 | 1370345137 | 1386721981 | 1517002959 | 386927 | SRX23559290 | SRS20405500 | SRA1798922 | The Seventh Affiliated Hospital Of Southern Medical University|Department of Laboratory Medicine | The Seventh Affiliated Hospital Of Southern Medical University | B | B | biological fallback assumption | legacy | early | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-02-07 | Larval | Larval | Whole Organism | All anatomical structures |