run_metadata: 30255
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30255 | SRR27756865 | SRX23421860 | SRS20276789 | SRP486416 | PRJNA1069604 | Danio rerio strain:TL | breed:Danio rerio Raw sequence reads | PRJNA1069604 | Other | To study the effect of a gene deletion in zebrafish | MIMARKS Specimen sample from Danio rerio | WT | strain:WT|collection date:2023 02 28|depth:missing|elev:missing|env broad scale:missing|env local scale:missing|env medium:missing|geo loc name:missing|isol growth condt:missing|lat lon:missing|BioSampleModel:MIMARKS.specimen|BioSampleModel:MIGS/MIMS/MIMARKS.microbial | Sample J | 9 | 9 | common method | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP486416 | tu2.R1.fq.gz tu2.R2.fq.gz | fastq fastq | 7024719799.0 | 24627933.0 | tu2.R1.fq.gz | 0:142.63 1:142.60 | A:1841519314;C:1662861553;G:1679614735;T:1840705226;N:18971 | 142 | 142 | 1841519314 | 1662861553 | 1679614735 | 1840705226 | 18971 | SRX23421860 | SRS20276789 | SRA1792726 | Hunan Normal University|Hunan Normal University | Hunan Normal University Hunan Normal University Hunan Normal University | 2 | 0.96006 | 0.96141 | 0.06713 | 0.06631 | 0.67464 | 0.67426 | 0.48684 | 0.48648 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-01-29 | Undetermined | Undetermined | Undetermined | Undetermined |