run_metadata: 29840
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29840 | SRR27586310 | SRX23255332 | SRS20157331 | SRP484115 | PRJNA1065252 | Study of spermine on prednisolone treated zebrafish larvae | PRJNA1065252 | Other | RNA sequencing was conducted in zebrafish larvae received prednisolone PN only OP group and PN with spermine SPM group aiming at revealing the key molecular mediating the anti osteoporosis effect of spermine. | SPM3 | SPM3 | SPM3 | strain:Tubingen line|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:7 day|dev stage:larvae|collection date:2022 11 21|geo loc name:China:Shanghai|sex:not determined|tissue:whole body|birth date:2022 11 14|birth location:China:Shanghai|health state:OP+SPM|sample type:Experimental|treatment:prednisol1+spermine|replicate:biological replicate3|BioSampleModel:Model organism or animal | RNA Seq of zebrafish: larvae | SPM3 | SPM3 | Total RNA was extracted and RNA integrity was assessed by agarose gel electrophoresis purity was checked using a Nanodrop OD260/280 ratio between 1.8 2.2 and quantified with Qubit. The samples were sequenced using the Illumina NovaSeq 6000 platform. The Skewer software trimmed splice sequences and low quality fragments. | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP484115 | SPM3_221124N_S30_L004_R1_001.fastq.gz SPM3_221124N_S30_L004_R2_001.fastq.gz | fastq fastq | 10885465576.0 | 36044588.0 | SPM3 221124N S30 L004 R1 001.fastq.gz | 0:151 1:151 | A:2964982971;C:2446827592;G:2632817265;T:2840605296;N:232452 | 151 | 151 | 2964982971 | 2446827592 | 2632817265 | 2840605296 | 232452 | SRX23255332 | SRS20157331 | Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2024-01-17 | Larval | Larval | Trunk | Surface Structure |