run_metadata: 29804
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29804 | SRR27437222 | SRX23109543 | SRS20064316 | SRP482087 | PRJNA1061474 | Transcriptional sequencing of zearalenone treated zebrafish embryos | PRJNA1061474 | Other | To identify the key genes involved in zearalenone toxicity. Transcriptomics analysis was performed. | ZEA1 1 | strain:not applicable|isolate:treatment1 1 treat with 1000 ug L 1 zearalen1|breed:not collected|cultivar:not applicable|ecotype:not collected|age:24 hpf|dev stage:24 hpf|collection date:not collected|geo loc name:not collected|sex:not collected|tissue:whole embryo|BioSampleModel:Model organism or animal | zearalen11000 1 | Z11 | Z11 | treatment1 1 treat with 1000 ug L 1 zearalenone | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP482087 | ZEA1-1_1.fq.gz ZEA1-1_2.fq.gz | fastq fastq | 5776274400.0 | 19254248.0 | ZEA1 1 1.fq.gz | 0:150 1:150 | A:1548868249;C:1335432962;G:1337666172;T:1554211084;N:95933 | 150 | 150 | 1548868249 | 1335432962 | 1337666172 | 1554211084 | 95933 | SRX23109543 | SRS20064316 | SRA1780284 | Sichuan Agricultural University|Animal Nutrition Institute | Sichuan Agricultural University | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2024-01-06 | Pharyngula | Embryo | Whole Organism | All anatomical structures |