run_metadata: 29650
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29650 | SRR27397723 | SRX23073956 | SRS20033308 | SRP480899 | PRJNA1060279 | EPIFISH | PRJNA1060279 | Other | Epigenetic changes in fish during domestication | RRBS library11 | PG3 | strain:ab|age:adult|collection date:2023 02 02|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 11|BioSampleModel:Model organism or animal | RNA seq of danio rerio | RRBS11 | RRBS11 | Library preparation kit used Zymo Seq RRBS Library Kit | Bisulfite-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP480899 | PG3_L7_1.fq.gz PG3_L7_2.fq.gz | fastq fastq | 1256812500.0 | 4189375.0 | PG3 L7 1.fq.gz | 0:150 1:150 | A:318736087;C:194540494;G:434374337;T:309107761;N:53821 | 150 | 150 | 318736087 | 194540494 | 434374337 | 309107761 | 53821 | SRX23073956 | SRS20033308 | SRA1777947 | Nord University|Bioscience and Aquaculture | Nord University | 2 | 0.01424 | 0.00046 | 0.01316 | 0.00036 | 0.99683 | 0.99975 | 0.49746 | 0.5 | 150 | 150 | T | T | mates < 9% mapping rate | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Norway | 2024-01-02 | Adult | Adult | Muscle | Muscular System |