run_metadata: 29647
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29647 | SRR27397720 | SRX23073959 | SRS20033311 | SRP480899 | PRJNA1060279 | EPIFISH | PRJNA1060279 | Other | Epigenetic changes in fish during domestication | RRBS library4 | CG4 | strain:ab|age:adult|collection date:2023 02 05|geo loc name:Italy|sex:male|tissue:Muscle|Source materail identifiers:day 4|BioSampleModel:Model organism or animal | RNA seq of danio rerio | RRBS4 | RRBS4 | Library preparation kit used Zymo Seq RRBS Library Kit | Bisulfite-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP480899 | CG4_L7_1.fq.gz CG4_L7_2.fq.gz | fastq fastq | 1547200200.0 | 5157334.0 | CG4 L7 1.fq.gz | 0:150 1:150 | A:389261224;C:230650937;G:559928386;T:367293552;N:66101 | 150 | 150 | 389261224 | 230650937 | 559928386 | 367293552 | 66101 | SRX23073959 | SRS20033311 | SRA1777947 | Nord University|Bioscience and Aquaculture | Nord University | 2 | 0.01121 | 0.00022 | 0.01024 | 0.00018 | 0.99713 | 0.99991 | 0.56111 | 1.0 | 150 | 150 | T | T | mates < 9% mapping rate | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Norway | 2024-01-02 | Adult | Adult | Muscle | Muscular System |