run_metadata: 29172
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29172 | SRR27217534 | SRX22896255 | SRS19868300 | SRP478184 | PRJNA1052591 | Danio rerio Raw sequence reads | PRJNA1052591 | Other | Knockout transcriptome sequencing of TRPA1b gene in zebrafish | A1 PGC 24 2 | strain:TRPA1b KO2|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal | A1 PGC 24 2 | A1 PGC 24 2 | A1 PGC 24 2 | ribonucleic acid | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq X Plus | SRP478184 | A1_PGC_24-2_R1.fq.gz A1_PGC_24-2_R2.fq.gz | fastq fastq | 6940389600.0 | 23134632.0 | A1 PGC 24 2 R1.fq.gz | 0:150 1:150 | A:1785833122;C:1673393460;G:1710182746;T:1770937783;N:42489 | 150 | 150 | 1785833122 | 1673393460 | 1710182746 | 1770937783 | 42489 | SRX22896255 | SRS19868300 | SRA1769619 | Shanghai Ocean University|College of Aquaculture and Life Sciences | Shanghai Ocean University | 2 | 0.95372 | 0.95441 | 0.06919 | 0.06949 | 0.70013 | 0.70177 | 0.47547 | 0.47456 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2023-12-15 | Pharyngula | Embryo | Trunk | Surface Structure |