run_metadata: 29169
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29169 | SRR27217531 | SRX22896258 | SRS19868303 | SRP478184 | PRJNA1052591 | Danio rerio Raw sequence reads | PRJNA1052591 | Other | Knockout transcriptome sequencing of TRPA1b gene in zebrafish | WT PGC 24 2 | strain:WT2|age:1.25dpf|collection date:2023 08 21|geo loc name:China: shanghai|sex:not determined|tissue:trunk|BioSampleModel:Model organism or animal | WT PGC 24 2 | WT PGC 24 2 | WT PGC 24 2 | ribonucleic acid | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq X Plus | SRP478184 | WT_PGC_24-2_R1.fq.gz WT_PGC_24-2_R2.fq.gz | fastq fastq | 6675099900.0 | 22250333.0 | WT PGC 24 2 R1.fq.gz | 0:150 1:150 | A:1719486221;C:1606465584;G:1644483527;T:1704624083;N:40485 | 150 | 150 | 1719486221 | 1606465584 | 1644483527 | 1704624083 | 40485 | SRX22896258 | SRS19868303 | SRA1769619 | Shanghai Ocean University|College of Aquaculture and Life Sciences | Shanghai Ocean University | 2 | 0.95744 | 0.95652 | 0.04846 | 0.04825 | 0.70804 | 0.70912 | 0.46447 | 0.46577 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2023-12-15 | Pharyngula | Embryo | Trunk | Surface Structure |