run_metadata: 29069
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29069 | SRR27010042 | SRX22702832 | SRS19695441 | SRP475263 | PRJNA1047321 | Effect of microglial replacement on RNAseT2 deficient leukodystrophy in zebrafish | PRJNA1047321 | Other | RNA sequencing of zebrafish brains to assess efficiency of macrophage transplantation as a therapy in a zebrafish model of rnaset2 leukodystrophy. | rnaset2 irf8 transplanted visible cells G1 | G1 | strain:nacre|isolate:n/a|breed:n/a|cultivar:n/a|ecotype:n/a|age:4 weeks|dev stage:juvenile|collection date:2023 03|geo loc name:United Kingdom: Sheffield|sex:unknown|tissue:brain|replicate:G1|BioSampleModel:Model organism or animal | RNA seq of zebrafish: brain | G1 | G1 | RNA was extracted polyA enriched and libraries prepared with the NEBNext Ultra II Directional RNA Library prep kit for Illumina | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP475263 | G1_R1_001.fastq.gz G1_R2_001.fastq.gz | fastq fastq | 6745303500.0 | 22484345.0 | G1 R1 001.fastq.gz | 0:150 1:150 | A:1832990297;C:1535916761;G:1572331210;T:1804054965;N:10267 | 150 | 150 | 1832990297 | 1535916761 | 1572331210 | 1804054965 | 10267 | SRX22702832 | SRS19695441 | SRA1760882 | University of York|Biology | University of York | 2 | 0.9424 | 0.94298 | 0.12822 | 0.12534 | 0.68775 | 0.68854 | 0.4869 | 0.48958 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | nebnext | bulk | unknown | unknown | United Kingdom | 2023-12-01 | Multi-stage | Multi-stage | Brain | Nervous System |