run_metadata: 29067
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29067 | SRR27010040 | SRX22702834 | SRS19695443 | SRP475263 | PRJNA1047321 | Effect of microglial replacement on RNAseT2 deficient leukodystrophy in zebrafish | PRJNA1047321 | Other | RNA sequencing of zebrafish brains to assess efficiency of macrophage transplantation as a therapy in a zebrafish model of rnaset2 leukodystrophy. | rnaset2 irf8 transplanted visible cells G5 | G5 | strain:nacre|isolate:n/a|breed:n/a|cultivar:n/a|ecotype:n/a|age:4 weeks|dev stage:juvenile|collection date:2023 03|geo loc name:United Kingdom: Sheffield|sex:unknown|tissue:brain|replicate:G5|BioSampleModel:Model organism or animal | RNA seq of zebrafish: brain | G5 | G5 | RNA was extracted polyA enriched and libraries prepared with the NEBNext Ultra II Directional RNA Library prep kit for Illumina | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP475263 | G5_R2_001.fastq.gz G5_R1_001.fastq.gz | fastq fastq | 8086012500.0 | 26953375.0 | G5 R1 001.fastq.gz | 0:150 1:150 | A:2209424775;C:1827141351;G:1886144200;T:2163290263;N:11911 | 150 | 150 | 2209424775 | 1827141351 | 1886144200 | 2163290263 | 11911 | SRX22702834 | SRS19695443 | SRA1760882 | University of York|Biology | University of York | 2 | 0.94005 | 0.94009 | 0.13869 | 0.13535 | 0.68874 | 0.68876 | 0.49518 | 0.49562 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | nebnext | bulk | unknown | unknown | United Kingdom | 2023-12-01 | Multi-stage | Multi-stage | Brain | Nervous System |