run_metadata: 28889
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28889 | SRR26783954 | SRX22482167 | SRS19495548 | SRP471222 | PRJNA1038711 | Zebrafish leukemia sequencing | PRJNA1038711 | Other | Validation of an ETV6::RUNX1 positive pB ALL zebrafish model | ETV6::RUNX1 tumor #3 | isolate:ETV6::RUNX1 knock in zebrafish #3|age:9 month 16 month|collection date:2023 02 05|geo loc name:Finland: Tampere Europe|sex:female|tissue:Kidney marrow|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: leukemic whole kidney marrow #3 | A3 | A3 | PCR | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina HiSeq X | SRP471222 | A3_EKRN230034965-1A_HHG75DSX7_L2_1.fq.gz A3_EKRN230034965-1A_HHG75DSX7_L2_2.fq.gz | fastq fastq | 7439426700.0 | 24798089.0 | A3 EKRN230034965 1A HHG75DSX7 L2 1.fq.gz | 0:150 1:150 | A:1997063524;C:1750471227;G:1730255985;T:1961607399;N:28565 | 150 | 150 | 1997063524 | 1750471227 | 1730255985 | 1961607399 | 28565 | SRX22482167 | SRS19495548 | SRA1748743 | Tampere University|Clinical Medicine | Tampere University | 2 | 0.93247 | 0.93234 | 0.10911 | 0.10805 | 0.73359 | 0.73377 | 0.49804 | 0.4981 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Finland | 2023-11-10 | Adult | Adult | Multi-tissue | Multi-system |