run_metadata: 28883
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28883 | SRR26783948 | SRX22482173 | SRS19495553 | SRP471222 | PRJNA1038711 | Zebrafish leukemia sequencing | PRJNA1038711 | Other | Validation of an ETV6::RUNX1 positive pB ALL zebrafish model | Non leukemic kidney marrow control #1 | isolate:UAS::GFP control #1|age:9 month 16 month|collection date:2023 01 11|geo loc name:Finland: Tampere Europe|sex:male|tissue:Kidney marrow|BioSampleModel:Model organism or animal | RNA Seq of danio rerio: non leukemic whole kidney marrow #1 | A9 | A9 | PCR | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina HiSeq X | SRP471222 | A9_EKRN230034971-1A_HHG75DSX7_L2_1.fq.gz A9_EKRN230034971-1A_HHG75DSX7_L2_2.fq.gz | fastq fastq | 6119764500.0 | 20399215.0 | A9 EKRN230034971 1A HHG75DSX7 L2 1.fq.gz | 0:150 1:150 | A:1652919782;C:1426521039;G:1415190390;T:1625109104;N:24185 | 150 | 150 | 1652919782 | 1426521039 | 1415190390 | 1625109104 | 24185 | SRX22482173 | SRS19495553 | SRA1748743 | Tampere University|Clinical Medicine | Tampere University | 2 | 0.93503 | 0.93495 | 0.07197 | 0.07148 | 0.71995 | 0.71973 | 0.5119 | 0.51499 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Finland | 2023-11-10 | Adult | Adult | Multi-tissue | Multi-system |