run_metadata: 28533
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28533 | SRR26488236 | SRX22192094 | SRS19248767 | SRP468057 | PRJNA1027976 | Danio rerio BCR rep seq Raw sequence reads | PRJNA1027976 | Other | A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish. | Kidney tissue from AB strain zebrafish was used to collect a library of IgM and IgZ2 without xxx. | Zebrafish AB Kidney Unimmunization | UI AB | strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:Unimmunization|BioSampleModel:Model organism or animal | Rep Seq of zebrafish AB IgM without xxx: adult kidney fish2 | zebrafish AB Kidney Unimmunization IgM Fish2 | zebrafish AB Kidney Unimmunization IgM Fish2 | A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. In the 11 nave individuals without xxx a single AB zebrafish kidney was utilized to construct a library of fish2 IgM. | AMPLICON | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina MiSeq | SRP468057 | UI_AB_Ki_M_Fish2_clean_R1.fastq.gz UI_AB_Ki_M_Fish2_clean_R2.fastq.gz | fastq fastq | 235187554.0 | 390677.0 | UI AB Ki M Fish2 clean R1.fastq.gz | 0:301 1:301 | A:63276642;C:54233985;G:55195713;T:62481210;N:4 | 301 | 301 | 63276642 | 54233985 | 55195713 | 62481210 | 4 | SRX22192094 | SRS19248767 | SRA1738037 | Sun Yat-sen University|School of Life Sciences | Sun Yat-sen University | 2 | 0.12903 | 0.42746 | 0.0 | 0.0323 | 0.99995 | 0.99987 | 0.0 | 9e-05 | 301 | 301 | B | B | mate1-mate2 similar by mapping diff | illumina | miseq | full_length | poly_a | smarter | bulk | unknown | unknown | China | 2023-10-24 | Adult | Adult | Multi-tissue | Multi-system |