run_metadata: 28528
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28528 | SRR26502115 | SRX22205902 | SRS19261295 | SRP468057 | PRJNA1027976 | Danio rerio BCR rep seq Raw sequence reads | PRJNA1027976 | Other | A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish. | AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the Vibrio anguillarum via IP injection. | Zebrafish AB IP Va 28d | IPVa 28d AB | strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP Vibrio anguillarum|BioSampleModel:Model organism or animal | Rep Seq of zebrafish AB IgZ2 at 28 days post the Vibrio anguillarum via IP injection: adult kidney fish1 | zebrafish AB Kidney IP Va IgZ2 Fish1 | zebrafish AB Kidney IP Va IgZ2 Fish1 | A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish1 kidneys were harvested 28 days post IP injected Vibrio anguillarum to construct an IgZ2 library. | AMPLICON | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina MiSeq | SRP468057 | IPVa_28d_AB_Ki_Z2_Fish1_clean_R1.fastq.gz IPVa_28d_AB_Ki_Z2_Fish1_clean_R2.fastq.gz | fastq fastq | 96198600.0 | 160331.0 | IPVa 28d AB Ki Z2 Fish1 clean R1.fastq.gz | 0:300 1:300 | A:26939421;C:21370857;G:21135801;T:26737674;N:14847 | 300 | 300 | 26939421 | 21370857 | 21135801 | 26737674 | 14847 | SRX22205902 | SRS19261295 | SRA1738828 | Sun Yat-sen University|School of Life Sciences | Sun Yat-sen University | 2 | 0.00209 | 0.50064 | 5e-05 | 0.05156 | 0.99955 | 0.99969 | 0.06435 | 0.00015 | 300 | 300 | T | B | mate1 technical by mapping diff | illumina | miseq | full_length | poly_a | smarter | bulk | unknown | unknown | China | 2023-10-25 | Adult | Adult | Multi-tissue | Multi-system |