run_metadata: 28519
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28519 | SRR26502441 | SRX22206236 | SRS19261598 | SRP468057 | PRJNA1027976 | Danio rerio BCR rep seq Raw sequence reads | PRJNA1027976 | Other | A library of B cell receptors including IgM and IgZ2 was constructed using the SMARTer Human BCR Profiling Kit to understand its expression in the AB strain of zebrafish. | AB strain zebrafish was used to collect a library of IgM and IgZ2 at 28 days post the TNP KLH via IP injection. | Zebrafish AB IP TNP KLH 28d | IPTNP 28d AB | strain:AB|dev stage:adult|sex:not determined|tissue:kidney gill Intestines|collection date:2022|geo loc name:not applicable|health state:health|treatment:IP TNP KLH|BioSampleModel:Model organism or animal | Rep Seq of zebrafish AB IgM at 28 days post the TNP KLH via IP injection: adult kidney fish5 | zebrafish AB Kidney IP TNPKLH IgM Fish5 | zebrafish AB Kidney IP TNPKLH IgM Fish5 | A method was designed for constructing a AB strain zebrafish B cell receptor BCR library based on the SMARTer Human BCR IgG IgM HKL Profiling Kit. Fish5 kidneys were harvested 28 days post IP injected TNP KLH to construct an IgM library. | AMPLICON | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina MiSeq | SRP468057 | IPTNP_28d_AB_Ki_M_Fish5_clean_R1.fastq.gz IPTNP_28d_AB_Ki_M_Fish5_clean_R2.fastq.gz | fastq fastq | 627508800.0 | 1045848.0 | IPTNP 28d AB Ki M Fish5 clean R1.fastq.gz | 0:300 1:300 | A:166970849;C:144788459;G:146254051;T:169495382;N:59 | 300 | 300 | 166970849 | 144788459 | 146254051 | 169495382 | 59 | SRX22206236 | SRS19261598 | SRA1738863 | Sun Yat-sen University|School of Life Sciences | Sun Yat-sen University | 2 | 0.14044 | 0.5736 | 0.0 | 0.07097 | 0.99997 | 0.99983 | 0.0 | 0.00011 | 300 | 300 | T | B | mate1 technical by mapping diff | illumina | miseq | full_length | poly_a | smarter | bulk | unknown | unknown | China | 2023-10-25 | Adult | Adult | Multi-tissue | Multi-system |