run_metadata: 28490
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28490 | SRR26319601 | SRX22027740 | SRS19100857 | SRP465070 | PRJNA1025141 | Danio rerio Raw sequence reads | PRJNA1025141 | Other | Transcriptome sequencing of A. sinensis leaf tea treated on zebrafish sleep. | Treatment | CX3 for transcriptome 3 | CX3 | strain:AB|cultivar:WT|ecotype:China: Jiangsu|age:7 dpf|dev stage:Larvae|collection date:2022 11|geo loc name:China: Jiangsu suzhou|sex:pooled male and female|tissue:larvae|lat lon:31.32 N 120.67 E|treatment:Treatment Group|BioSampleModel:Model organism or animal | ALST3 for transcriptome 3 | CX3 for transcriptome 3 | CX3 for transcriptome 3 | CX3 for transcriptome 3 | RNA-Seq | TRANSCRIPTOMIC | size fractionation | PAIRED | ILLUMINA | HiSeq X Ten | SRP465070 | Unknown_AY803-03T0006_good_1.fq.gz Unknown_AY803-03T0006_good_2.fq.gz | fastq fastq | 6255596356.0 | 20929531.0 | Unknown AY803 03T0006 good 1.fq.gz | 0:149.44 1:149.44 | A:1657365560;C:1463722268;G:1467057724;T:1667269298;N:181506 | 149 | 149 | 1657365560 | 1463722268 | 1467057724 | 1667269298 | 181506 | SRX22027740 | SRS19100857 | SRA1727563 | Soochow University|School of biology & basic medical sciences | Soochow University | 2 | 0.89228 | 0.91654 | 0.09286 | 0.09714 | 0.6588 | 0.65604 | 0.4631 | 0.45773 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | size_fractionation | unknown | bulk | unknown | unknown | Unknown | 2023-10-11 | Larval | Larval | Whole Organism | All anatomical structures |