run_metadata: 28475
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28475 | SRR26253208 | SRX21963290 | SRS19039864 | SRP464138 | PRJNA1022587 | Danio rerio Raw sequence reads | PRJNA1022587 | Whole Genome Sequencing | In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis of the small RNA. | Small RNA IFN1 1 | strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 17|BioSampleModel:Model organism or animal | Small RNAseq of zebrafish | Small RNA IFNA1 | Small RNA IFNA1 | small RNA seq of zebrafish | miRNA-Seq | TRANSCRIPTOMIC | PCR | SINGLE | ILLUMINA | Illumina NovaSeq 6000 | SRP464138 | IFN1-1.deadaptor.fq.gz | fastq | 329358383.0 | 11799176.0 | IFN1 1.deadaptor.fq.gz | 0:27.91 | A:84093681;C:68961271;G:86502739;T:89779605;N:21087 | 27 | 84093681 | 68961271 | 86502739 | 89779605 | 21087 | SRX21963290 | SRS19039864 | SRA1724093 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | 1 | 0.92116 | 0.07483 | 0.96796 | 0.75179 | 22 | B | usable mapping rate | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2023-10-02 | Undetermined | Undetermined | Cell Line | Cell Line |