run_metadata: 28458
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28458 | SRR26265233 | SRX21974767 | SRS19050630 | SRP464312 | PRJNA1022576 | Danio rerio Raw sequence reads | PRJNA1022576 | Whole Genome Sequencing | In teleost type I IFNs are categorized into 2 subgroups containing one or two pairs of disulphide bond. However their functional differences have not been fully unveiled. It has been shown that IFN1 can be induced by viruses and trigger strong antiviral response in inducing hundreds of IFN stimulated genes conferring cell resistance to viruses. However the antiviral functions of IFN4 have been debated. To investigate the genes modulated by IFN1 and IFN4 ZF4 cells were stimulated with recombinant IFN1 and IFN4 and were performed transcriptome analysis. | IFN4 2 | strain:not collected|age:not collected|collection date:2023 08 20|geo loc name:not collected|sex:not collected|tissue:not collected|cell line:ZF4|replicate:biological replicate 10|BioSampleModel:Model organism or animal | RNAseq of zebrafish | IFND2 | IFND2 | normal RNA seq of zebrafish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP464312 | IFN4-2.R2.fq.gz IFN4-2.R1.fq.gz | fastq fastq | 6934783900.0 | 23533465.0 | IFN4 2.R1.fq.gz | 0:147.35 1:147.33 | A:1868083790;C:1590902416;G:1598661179;T:1876555558;N:580957 | 147 | 147 | 1868083790 | 1590902416 | 1598661179 | 1876555558 | 580957 | SRX21974767 | SRS19050630 | SRA1725060 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | 2 | 0.95226 | 0.95256 | 0.09237 | 0.09199 | 0.73403 | 0.73472 | 0.50112 | 0.4946 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2023-10-03 | Undetermined | Undetermined | Cell Line | Cell Line |