run_metadata: 273
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 273 | DRR162468 | DRX153087 | DRS083148 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 7 mpf zebrafish replicate2 | SAMD00152416 | sample name:b07 2|age:7 month|biological replicate:2|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152416 | DRX153087 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152416 | 1160349000.0 | 5801745.0 | DRR162468 | 0:100 1:100 | A:350211581;C:228387129;G:229679563;T:349919152;N:2151575 | 100 | 100 | 350211581 | 228387129 | 229679563 | 349919152 | 2151575 | DRX153087 | DRS083148 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.91146 | 0.87717 | 0.20422 | 0.19494 | 0.7083 | 0.72082 | 0.55642 | 0.56386 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System |