run_metadata: 263
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 263 | DRR162478 | DRX153097 | DRS083158 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | brain sample from 39 mpf zebrafish replicate2 | SAMD00152426 | sample name:b39 2|age:39 month|biological replicate:2|tissue:brain | Illumina HiSeq 2000 paired end sequencing of SAMD00152426 | DRX153097 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152426 | 1389632200.0 | 6948161.0 | DRR162478 | 0:100 1:100 | A:397337261;C:295934915;G:295794427;T:398240347;N:2325250 | 100 | 100 | 397337261 | 295934915 | 295794427 | 398240347 | 2325250 | DRX153097 | DRS083158 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.92803 | 0.89621 | 0.15624 | 0.14998 | 0.69988 | 0.70985 | 0.54263 | 0.53655 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Brain | Nervous System |