run_metadata: 25319

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
25319	SRR25786852	SRX21509235	SRS18740265	SRP457465	PRJNA1010662	The miR 144/Hmgn2 regulatory axis orchestrates chromatin organization during erythropoiesis.	PRJNA1010662	Other	Differentiation of stem and progenitor cells is a highly regulated process that involves the coordinated action of multiple layers of regulation. Here we show how the post transcriptional regulatory layer instructs the chromatin regulation level via miR 144 and its targets to orchestrate chromatin condensation during erythropoiesis. The loss of miR 144 leads to impaired chromatin condensation during erythrocyte maturation.				RNA seq Erythrocytes Wild type Danio rerio 3 dpf	CD KD WT		strain:Wildtype\|age:3 days\|collection date:not provided\|geo loc name:not provided\|sex:mixed\|tissue:whole embryo\|BioSampleModel:Model organism or animal									RNA seq Erythrocytes Wild type Danio rerio 3 dpf replicate 1	CD KD WT1	CD KD WT1	Libraries were made using Illumina mRNA seq library prep kit			RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	NextSeq 2000		SRP457465			CD_KD_WT1-R_S1_L001_R1_001.fastq.gz CD_KD_WT1-R_S1_L001_R2_001.fastq.gz	fastq fastq	13279321095.0	67105432.0	CD KD WT1 R S1 L001 R1 001.fastq.gz	0:98.98 1:98.91	A:3310018513;C:3313506420;G:3374819099;T:3243710775;N:37266288	98	98			3310018513	3313506420	3374819099	3243710775	37266288	SRX21509235	SRS18740265	SRA1701488	University of East Anglia\|Biological Sciences	University of East Anglia	2	0.97038	0.97604	0.04235	0.04238	0.83676	0.8367	0.45607	0.45443	101	101	B	B	biological fallback assumption	illumina	nextseq_v2	unknown	poly_a	unknown	bulk	unknown	unknown		United Kingdom	2023-08-30	Larval	Larval	Whole Organism	All anatomical structures