run_metadata: 23473
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23473 | ERR960921 | ERX1037968 | ERS789893 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | SAMEA3482489 | SC | age:2 days|ArrayExpress OrganismPart:Single cell|ArrayExpress Phenotype:WT|ArrayExpress Species:Zebrafish|ENA FIRST PUBLIC:2015 07 13T15:15:42Z|ENA LAST UPDATE:2018 03 09T02:18:14Z|External Id:SAMEA3482489|INSDC center name:SC|INSDC first public:2015 07 13T15:15:42Z|INSDC last update:2018 03 09T02:18:14Z|INSDC status:public|Submitter Id:crest 1st 96 12 sc 2203967|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence AGTACTACGCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:crest 1st 96 12 sc 2203967|scientific name:Danio rerio|strain:H/LF | Illumina MiSeq paired end sequencing | SC EXP 15298 1#12 | 12738279 | Illumina sequencing of library 12738279 constructed from sample accession ERS789893 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 15298 1. This submission includes reads tagged with the sequence AGTACTACGCG. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16 | 15298_1#12.cram | cram | 31079196.0 | 240924.0 | SC RUN 15298 1#12 | 0:54 1:75 | A:8578418;C:5741067;G:10187601;T:6572110;N:0 | 54 | 75 | 8578418 | 5741067 | 10187601 | 6572110 | 0 | ERX1037968 | ERS789893 | ERA457908 | The Wellcome Trust Sanger Institute|European Nucleotide Archive | Wellcome Sanger Institute | 2 | 8e-05 | 0.00727 | 7e-05 | 0.00545 | 1.0 | 0.99993 | 0.66666 | 54 | 75 | T | T | mates < 9% mapping rate | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2015-07-13 | Hatching | Embryo | Undetermined | Embryo Imprecise |