run_metadata: 231
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 231 | DRR162510 | DRX153129 | DRS083190 | DRP004696 | PRJDB7713 | Age associated transcriptome analysis in 5 tissues of zebrafish | DRP004696 | Transcriptome Analysis | We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014. | heart sample from 16 mpf zebrafish replicate4 | SAMD00152458 | sample name:h16 4|age:16 month|biological replicate:4|tissue:heart | Illumina HiSeq 2000 paired end sequencing of SAMD00152458 | DRX153129 | 1 | 1 | Illumina TruSeq Stranded mRNA HT Kit | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | DRP004696 | Illumina HiSeq 2000 paired end sequencing of SAMD00152458 | 826575600.0 | 4132878.0 | DRR162510 | 0:100 1:100 | A:248945884;C:164298731;G:163783086;T:249505745;N:42154 | 100 | 100 | 248945884 | 164298731 | 163783086 | 249505745 | 42154 | DRX153129 | DRS083190 | DRA007711 | UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology | Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo | 2 | 0.92443 | 0.9204 | 0.12773 | 0.1248 | 0.75702 | 0.75948 | 0.55913 | 0.57701 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Japan | 2018-12-24 | Adult | Adult | Heart | Cardiovascular System |