run_metadata: 22362
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22362 | ERR958788 | ERX1035835 | ERS790016 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | SAMEA3482612 | SC | ArrayExpress DevelopmentalStage:6 hpf|ArrayExpress Genotype:T/LF|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2015 07 13T15:15:40Z|ENA LAST UPDATE:2018 03 09T02:20:51Z|External Id:SAMEA3482612|INSDC center name:SC|INSDC first public:2015 07 13T15:15:40Z|INSDC last update:2018 03 09T02:20:51Z|INSDC status:public|Submitter Id:Shield cell B3 sc 1884424|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. A 8 base indexing sequence TCAGGAGG is bases 13 to 20 of read 1 followed by GC and polyT.|sample name:Shield cell B3 sc 1884424|scientific name:Danio rerio|strain:T/LF | Illumina HiSeq 2500 paired end sequencing | SC EXP 12487 1#39 | 9702684 | Illumina sequencing of library 9702684 constructed from sample accession ERS790016 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 12487 1. This submission includes reads tagged with the sequence TCAGGAGG. | qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | ERP011007 | Illumina HiSeq 2500 paired end sequencing | ENA FIRST PUBLIC:2015 07 16|ENA LAST UPDATE:2018 11 16 | 12487_1#39.cram | cram | 212977700.0 | 1638290.0 | SC RUN 12487 1#39 | 0:55 1:75 | A:52959206;C:41280548;G:38924505;T:79787196;N:26245 | 55 | 75 | 52959206 | 41280548 | 38924505 | 79787196 | 26245 | ERX1035835 | ERS790016 | ERA457908 | The Wellcome Trust Sanger Institute|European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.45258 | 0.80674 | 0.43564 | 0.58959 | 0.99906 | 0.99752 | 0.62443 | 0.55477 | 55 | 75 | T | B | mate1 technical by mapping diff | illumina | hiseq_era | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2015-07-13 | Gastrula | Embryo | Undetermined | Embryo Imprecise |