run_metadata: 21620
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21620 | ERR1374787 | ERX1445913 | ERS1035958 | ERP011007 | PRJEB9859 | Transcriptome profiling of single zebrafish cells | Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 | Transcriptome Analysis | Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells. | Single cell TC6281267 | SAMEA3728809 | Wellcome Sanger Institute | ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728809|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:55Z|INSDC status:public|Submitter Id:613ffb40 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTGTGTAGCT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:613ffb40 a4bf 11e5 bdd9 68b59976a382 | Illumina MiSeq paired end sequencing | SC EXP 18668 1#311 | 15545000 | Illumina sequencing of library 15545000 constructed from sample accession ERS1035958 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTGTGTAGCT. | Transcriptome counting qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP011007 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 | 18668_1#311.cram | cram | 648612.0 | 5028.0 | SC RUN 18668 1#311 | 0:54 1:75 | A:162874;C:158142;G:139300;T:188296;N:0 | 54 | 75 | 162874 | 158142 | 139300 | 188296 | 0 | ERX1445913 | ERS1035958 | ERA610021 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.11688 | 0.12832 | 0.11687 | 0.12831 | 1.0 | 1.0 | 54 | 75 | B | B | biological fallback assumption | illumina | miseq | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-01-19 | Undetermined | Undetermined | Undetermined | Undetermined |